| 1 | FK DUKLA Praha a.s. | 26 | 15 | 5 | 6 | 50 | 44:27 | 17 |
| 2 | MFK Vyškov a.s. | 26 | 13 | 7 | 6 | 46 | 44:32 | 12 |
| 3 | SK Sigma Olomouc, a.s. B | 26 | 14 | 3 | 9 | 45 | 38:35 | 3 |
| 4 | FC SILON Táborsko a.s. | 26 | 11 | 9 | 6 | 42 | 36:23 | 13 |
| 5 | MFK Chrudim a.s. | 26 | 10 | 8 | 8 | 38 | 45:41 | 4 |
| 6 | AC Sparta Praha fotbal, a.s. B | 26 | 10 | 6 | 10 | 36 | 48:44 | 4 |
| 7 | FC Sellier & Bellot Vlašim, a.s. | 26 | 8 | 11 | 7 | 35 | 35:35 | 0 |
| 8 | FC ZBROJOVKA BRNO, a.s. | 26 | 10 | 4 | 12 | 34 | 34:34 | 0 |
| 9 | SK Líšeň 2019, a.s. | 26 | 8 | 10 | 8 | 34 | 29:30 | -1 |
| 10 | Slezský fotbalový club Opava a.s. | 26 | 9 | 7 | 10 | 34 | 27:29 | -2 |
| 11 | FK PŘÍBRAM a.s. | 26 | 10 | 3 | 13 | 33 | 28:39 | -11 |
| 12 | FK VIKTORIA ŽIŽKOV a.s. | 26 | 9 | 5 | 12 | 32 | 39:47 | -8 |
| 13 | FC VYSOČINA JIHLAVA, a.s. | 26 | 8 | 7 | 11 | 31 | 38:39 | -1 |
| 14 | Fotbalový klub Varnsdorf a.s. | 26 | 6 | 11 | 9 | 29 | 45:45 | 0 |
| 15 | 1. SK Prostějov, fotbalový klub a.s. | 26 | 8 | 4 | 14 | 28 | 33:47 | -14 |
| 16 | SK Hanácká Slavia Kroměříž a.s. | 26 | 6 | 6 | 14 | 24 | 27:43 | -16 |
